class: center, middle, inverse, title-slide # Index ## Data Analysis in R section of Laboratory and BIO00017C Professional Skills for Bioscientists ### Emma Rand ### University of York, UK --- # Index .font40[ .pull-left[ **Week 2 Introduction** - Slides [powerpoint](slides/01-Introduction-to-module.pptx) or [pdf](slides/01-Introduction-to-module.pdf) (will load in your browser) - [Video for slides](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=78563b32-6a62-4b16-b9a8-acb100aa793c) Panopto, UoY users only - [Getting started with Rstudio video](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=10b5193a-c246-49bf-9746-acaf00cd1781) Panopto, UoY users only - [RStudio Anatomy](x-slides/rstudio-anatomy.html) - [Data Structures and functions video](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=b9bc2b49-1c73-416e-b20f-acaf00e917dd) Panopto, UoY users only - ["On the psychology of statistics" Section 1.1](https://learningstatisticswithr.com/book/why-do-we-learn-statistics.html#whywhywhy) - [Workshop 1](workshops/01IntroductionToModuleAndRStudio.html) - [Getting help in Rstudio video](https://www.youtube.com/watch?v=tVQHFuitFJw&feature=youtu.be) Youtube **Week 3 Logic of hypothesis testing, data types and importing** - Slides [powerpoint](slides/02-logic-data-types-importing.pptx) or [pdf](slides/02-logic-data-types-importing.pdf) (will load in your browser) - Video for slides: [Welcome to Week 3!](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=7047d58a-546a-4ded-ae69-acb70077dc09) Panopto, UoY users only - Video for slides: [Data Types](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=78563b32-6a62-4b16-b9a8-acb100aa793c) Panopto, UoY users only - Video for slides: [Logic of hypothesis testing](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=ca648362-7c9d-432c-895b-acb70113daf7) Panopto, UoY users only - [Working directories and Paths](x-slides/working_dir_and_paths.html) - [Workshop 2](workshops/02TestingDataTypesReadingInData.html) - ["Data visualisation" 3.1 to 3.6](https://r4ds.had.co.nz/data-visualisation.html) **Week 4 Normal distributions and confidence intervals** - Slides [powerpoint](slides/03-normal-distributions-probabilities-ci.pptx) or [pdf](slides/03-normal-distributions-probabilities-ci.pdf) (will load in your browser) - Video for slides: [Welcome to Week 4!](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=b3573f53-834d-4ad8-b668-acbb009f4253) Panopto, UoY users only - Video for slides: [What is the normal distribution](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=0d7bf934-e0b2-4956-8996-acbb00a297d5) Panopto, UoY users only - ["An introduction to the normal distribution"](https://tinystats.github.io/teacups-giraffes-and-statistics/02_bellCurve.html) - Video for slides: [Sampling distributions and the Standard Error](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=e6e22c7c-213c-4953-aa3d-acbc00d468e7) Panopto, UoY users only - Video for slides: [Confidence Intervals](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=d9aad8e3-2efb-4f66-87b6-acbc00eec3eb) Panopto, UoY users only - Video for slides: [Confidence Intervals - small samples](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=21c518d8-8449-4fd6-a756-acbd00cf4eba) Panopto, UoY users only - [Workshop 3](workshops/03NormalDistributionCalculatingProbabilitiesAndCI.html) ] .pull-right[ **Week 5 One-sample (incl paired) t-tests and one-sample Wilcoxon** - Slides [powerpoint](slides/04-one-sample-tests.pptx) or [pdf](slides/04-one-sample-tests.pdf) (will load in your browser) - Video for slides: [Welcome to Week 5 and an introduction to one- and two-sample tests](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=e3e4235a-4cb8-4d6b-8a45-acc2009b5356) Panopto, UoY users only - ["Workflow: basics"](https://r4ds.had.co.nz/workflow-basics.html) - ["Workflow: projects"](https://r4ds.had.co.nz/workflow-projects.html) - Video for slides: [The one-sample t-test](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=30b205bc-a63c-4902-b8ff-acc200f8ab3d) Panopto, UoY users only - Video for slides: [The paired-sample t-test](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=ed62a0f9-5f85-4695-9556-acc200fee1fd) Panopto, UoY users only - Video for slides: [The one-sample Wilcoxon](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=875c405b-13e5-4740-b81a-acc201024eb8) Panopto, UoY users only - ["Fun and easy R graphs with images"](https://buzzrbeeline.blog/2018/06/13/fun-and-easy-r-graphs-with-images/) **Week 6 Two-sample t-tests and two-sample Wilcoxon** - Slides [powerpoint](slides/05-two-sample-tests.pptx) or [pdf](slides/05-two-sample-tests.pdf) (will load in your browser) - Video for slides: [Welcome to Week 6 and a recap on independent and non-independent samples](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=906ee048-8995-4525-9c79-accb00fc08be) Panopto, UoY users only - Video for slides: [Two-sample t-tests](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=d4976439-fc2f-4f2c-8f6f-accb00fe61ef) Panopto, UoY users only - ["Tidy Data"](https://vita.had.co.nz/papers/tidy-data.pdf) - Video for slides: [Two-sample Wilcoxon](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=0112b946-bd28-4bb7-a692-accb01171eda) Panopto, UoY users only - ["Data tranformation 5.1 to 5.6"](https://r4ds.had.co.nz/transform.html) - [Workshop 4](workshops/04OneAndTwoSampleTests.html) ] ] --- # Index .font40[ .pull-left[ **Week 7 One-way ANOVA and Kruskal-Wallis** - Slides [powerpoint](slides/06-one-way-anova-kw.pptx) or [pdf](slides/06-one-way-anova-kw.pdf) (will load in your browser) - Video for slides: [Welcome to Week 7 and Review and rationale](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=e0c87ebf-521d-4240-b604-acd20123c9de) Panopto, UoY users only - Video for slides: [One-way ANOVA](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=f380201e-f639-450f-89f1-acd300cb657f) Panopto, UoY users only - Video for slides: [Kruskal-Wallis](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=f49a44c3-d0f0-4552-bd71-acd3011a41b0) Panopto, UoY users only - ["readr"](https://readr.tidyverse.org/) - ["The R Graph Gallery"](https://www.r-graph-gallery.com/) - [Workshop 5](workshops/05OnewayANOVAandKruskalWallis.html) **Week 8 Two-way ANOVA** - Slides [powerpoint](slides/07-two-way-anova.pptx) or [pdf](slides/07-two-way-anova.pdf) (will load in your browser) - Video for slides: [Welcome to Week 8!](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=f9d10cd9-7876-4071-81a9-acd70110348d) Panopto, UoY users only - Video for slides: [Two-way ANOVA](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=20727f59-e25b-49f3-8b1c-acd70117f016) Panopto, UoY users only - Video for slides: [Understanding the interaction](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=20727f59-e25b-49f3-8b1c-acd70117f016) Panopto, UoY users only - [Workshop 6](workshops/06Two-wayAnova.html) ] .pull-right[ **Week 9 Correlation and Regression** - Slides [powerpoint](slides/08-correl-and-regression.pptx) or [pdf](slides/08-correl-and-regression.pdf) (will load in your browser) - Video for slides: [Welcome to Week 9!](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=9695b833-3a86-4b50-9c0b-acdb0098a2d1) Panopto, UoY users only - Video for slides: [Correlation](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=a1bda15a-7bdb-41c4-94b7-acdb009b52fc) Panopto, UoY users only - Video for slides: [Regression](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=8f8c4163-fe49-47b4-911c-acdb01217158) Panopto, UoY users only - [Workshop 7](workshops/07CorrelationAndRegression.html) **Week 10 Chi-squared tests** - Slides [powerpoint](slides/09-chi-squared.pptx) or [pdf](slides/09-chi-squared.pdf) (will load in your browser) - Video for slides: [Welcome to Week 10!](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=ebbb3aa4-2ff9-4bb3-b572-ace6012f9f7d) Panopto, UoY users only - Video for slides: [Goodness of fit](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=a1bda15a-7bdb-41c4-94b7-acdb009b52fc) Panopto, UoY users only - Video for slides: [Contingeny](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=792f9039-df2b-445a-9282-ace60139bae5) Panopto, UoY users only - [Workshop 8](workshops/08ChiSquaredTests.html) - [Zipping an RStudio Project folder](https://york.cloud.panopto.eu/Panopto/Pages/Viewer.aspx?id=7f3964c3-9bb8-4a84-8855-ace501320bd6) Panopto, UoY users only ] ] --- Emma Rand [emma.rand@york.ac.uk](mailto:emma.rand@york.ac.uk) Twitter: [@er13_r](https://twitter.com/er13_r) GitHub: [3mmaRand](https://github.com/3mmaRand) blog: https://buzzrbeeline.blog/ <br> <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png" /></a><br /><span xmlns:dct="http://purl.org/dc/terms/" property="dct:title">Data Analysis in R for BIO00017C</span> by <span xmlns:cc="http://creativecommons.org/ns#" property="cc:attributionName">Emma Rand</span> is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.